Documentation

LatticeZero Documentation

Categorized guides, references, and validation resources for docking, scoring, target prep, and integration workflows.

All Documentation

Every article is listed below and grouped by category.

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Getting Started

2 articles
Getting Started

Create your first project and score ligands in minutes.

Getting Started
Quickstart

First scoring job in under 10 minutes - step by step.

Getting Started

Scoring

4 articles
IsoScore

Ultra-fast rescoring engine (~4,000 lig/sec).

Scoring
Glossary

Key terms, metrics, and definitions.

Scoring
Physics Reference

All 14 scoring terms explained with physical interpretation.

Scoring

Docking

6 articles
Tools

Core molecular scoring tools.

Docking
QuickDock

Fast docking from SMILES - step by step guide.

Docking
IsoPose

GPU-accelerated molecular docking with auto-policy and conformer ensemble.

Docking
IsoPose Lab

Advanced docking workspace with WebGPU-accelerated GA search and cascade re-scoring.

Docking
FFT Docking Mode

Production FFT pose-source mode (Cartesian), guardrails, and reproducibility.

Docking
Design Dashboard

Compound management with ADME properties and scatter plots.

Docking

Target Preparation

2 articles
Target Prep

4-step receptor preparation pipeline.

Target Preparation
Target Library

Save and reuse receptor-ligand bundles.

Target Preparation

Profiles & Optimization

5 articles
Optimizer Workflow

How the profile optimizer works and when to use it.

Profiles & Optimization
Scoring Profiles

Understand and customize scoring weight profiles.

Profiles & Optimization
Profiles Library

Browse, compare, and manage scoring profiles.

Profiles & Optimization
Lead Optimization

FEP benchmark datasets for binding affinity validation.

Profiles & Optimization
Optimizer

Auto-tune scoring weights for your target.

Profiles & Optimization

API & CLI

2 articles
API Reference

REST API endpoints and integration guide.

API & CLI

Benchmarks & Validation

6 articles
Benchmark Results

DEKOIS2 validation results with tie-corrected AUC.

Benchmarks & Validation
Reproducibility

Determinism guarantees, GPU variance, and versioning.

Benchmarks & Validation
Reproduce Our Results

Download replication kits and verify benchmarks independently.

Benchmarks & Validation
Demo & Benchmarks

DEKOIS2 benchmark demo and validation results.

Benchmarks & Validation
LZ Packs

Pre-validated target bundles ready to use.

Benchmarks & Validation

General

11 articles
Platform Workflow

Visual overview of the end-to-end scoring and validation pipeline.

General
Guides

User guides and workflow documentation.

General
Autotune

Generate custom scoring profiles without labeled data.

General
How to Cite

Citation guidance for publications using LatticeZero.

General
FAQ

Frequently asked questions.

General
Troubleshooting

Common issues and solutions for the LatticeZero platform.

General
Security Posture

Enterprise security architecture, data handling, and compliance.

General